HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309616

Details for MGYG000309616, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethenecus faecipullorum Bacteria > Firmicutes > Bacilli > Acholeplasmatales > Anaeroplasmataceae > Pelethenecus > Pelethenecus faecipullorum
Cluster representative

MGYG000315040

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315040 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309616’s cluster representative genome MGYG000315040 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315040 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309616 Copy API Endpoint
Samples containing this genome

MGYG000309616’s cluster representative (MGYG000315040) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315040’s sequence. Because MGYG000309616 has been clustered with MGYG000315040 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309616.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315040

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.28 SAMEA7571782 Prebiotic
0.28 SAMEA10104922 Prebiotic
0.28 SAMEA7697601 Prebiotic
0.27 SAMEA7571829 Prebiotic
0.27 SAMEA9449925 Prebiotic
0.27 SAMEA10159270 Control
0.27 SAMEA10104992 Prebiotic
0.26 SAMEA10104989 Prebiotic
0.26 SAMEA10145572 Control
0.26 SAMEA7025240 Probiotic