HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309488

Details for MGYG000309488, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_A avicola Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A avicola
Cluster representative

MGYG000312723

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312723 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309488’s cluster representative genome MGYG000312723 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312723 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309488 Copy API Endpoint
Samples containing this genome

MGYG000309488’s cluster representative (MGYG000312723) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312723’s sequence. Because MGYG000309488 has been clustered with MGYG000312723 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309488.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312723

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Containment Sample accession Animal accession Treatment
0.25 SAMEA10105025 Prebiotic
0.25 SAMEA7571771 Prebiotic
0.24 SAMEA10145595 Control
0.24 SAMEA10536118 Probiotic
0.24 SAMEA10104915 Control
0.24 SAMEA10104923 Control
0.24 SAMEA9449927 Prebiotic
0.23 SAMEA7697609 Probiotic
0.23 SAMEA7571785 Probiotic
0.23 SAMEA9449844 Control