HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309483

Details for MGYG000309483, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Alistipes_A ihumii Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes_A > Alistipes_A ihumii
Cluster representative

MGYG000308241

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308241 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309483’s cluster representative genome MGYG000308241 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308241 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309483 Copy API Endpoint
Samples containing this genome

MGYG000309483’s cluster representative (MGYG000308241) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308241’s sequence. Because MGYG000309483 has been clustered with MGYG000308241 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309483.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308241

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.84 SAMEA9449956 Probiotic
0.82 SAMEA10145595 Control
0.82 SAMEA7697623 Probiotic
0.82 SAMEA9449944 Control
0.79 SAMEA9449947 Prebiotic
0.78 SAMEA7697592 Control
0.78 SAMEA14095991 Control
0.78 SAMEA7571823 Probiotic
0.78 SAMEA10105045 Control
0.78 SAMEA9449907 Prebiotic