HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309418

Details for MGYG000309418, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecalibacterium sp002160895 Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Faecalibacterium > Faecalibacterium sp002160895
Cluster representative

MGYG000316675

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316675 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309418’s cluster representative genome MGYG000316675 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316675 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309418 Copy API Endpoint
Samples containing this genome

MGYG000309418’s cluster representative (MGYG000316675) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316675’s sequence. Because MGYG000309418 has been clustered with MGYG000316675 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309418.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316675

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.23 SAMEA9449874 Prebiotic
0.23 SAMEA7571831 Control
0.23 SAMEA10104983 Control
0.22 SAMEA7571782 Prebiotic
0.22 SAMEA10145599 Control
0.22 SAMEA10104978 Control
0.22 SAMEA9449863 Prebiotic
0.22 SAMEA9449951 Prebiotic
0.22 SAMEA9449904 Control
0.22 SAMEA9449847 Probiotic