HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309149

Details for MGYG000309149, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Butyricicoccus avicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Butyricicoccus > Butyricicoccus avicola
Cluster representative

MGYG000320013

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320013 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309149’s cluster representative genome MGYG000320013 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320013 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309149 Copy API Endpoint
Samples containing this genome

MGYG000309149’s cluster representative (MGYG000320013) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320013’s sequence. Because MGYG000309149 has been clustered with MGYG000320013 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309149.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320013

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Containment Sample accession Animal accession Treatment
0.26 SAMEA9449962 Control
0.25 SAMEA10105047 Control
0.25 SAMEA7025286 Prebiotic
0.25 SAMEA7571819 Probiotic
0.25 SAMEA10105025 Prebiotic
0.25 SAMEA7571780 Control
0.24 SAMEA10159198 Prebiotic
0.24 SAMEA7025250 Control
0.24 SAMEA10104959 Prebiotic
0.24 SAMEA9449889 Probiotic