HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309092

Details for MGYG000309092, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coproplasma stercoravium Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma stercoravium
Cluster representative

MGYG000313061

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313061 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309092’s cluster representative genome MGYG000313061 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313061 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309092 Copy API Endpoint
Samples containing this genome

MGYG000309092’s cluster representative (MGYG000313061) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313061’s sequence. Because MGYG000309092 has been clustered with MGYG000313061 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309092.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313061

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Containment Sample accession Animal accession Treatment
0.41 SAMEA7025247 Probiotic
0.40 SAMEA9449834 Probiotic
0.40 SAMEA9449896 Prebiotic
0.40 SAMEA10105065 Prebiotic
0.40 SAMEA7571819 Probiotic
0.40 SAMEA10159258 Probiotic
0.39 SAMEA9449962 Control
0.39 SAMEA10105011 Prebiotic
0.39 SAMEA7571873 Prebiotic
0.38 SAMEA9449910 Probiotic