HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000309079

Details for MGYG000309079, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_A stercoripullorum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A stercoripullorum
Cluster representative

MGYG000310585

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000310585 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309079’s cluster representative genome MGYG000310585 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000310585 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309079 Copy API Endpoint
Samples containing this genome

MGYG000309079’s cluster representative (MGYG000310585) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000310585’s sequence. Because MGYG000309079 has been clustered with MGYG000310585 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309079.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000310585

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Containment Sample accession Animal accession Treatment
0.79 SAMEA9449952 Probiotic
0.79 SAMEA7025245 Probiotic
0.79 SAMEA7571827 Probiotic
0.79 SAMEA9449916 Probiotic
0.78 SAMEA10159267 Control
0.77 SAMEA9449868 Control
0.76 SAMEA10104916 Prebiotic
0.76 SAMEA7571807 Probiotic
0.76 SAMEA7571823 Probiotic
0.76 SAMEA14099424 Prebiotic