HoloFood Data Portal

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MGYG000309068

Details for MGYG000309068, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
CAG-465 Bacteria > Firmicutes_A > Clostridia > TANB77 > CAG-465 > CAG-465
Cluster representative

MGYG000308428

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308428 on MGnify
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Annotations

MGYG000309068’s cluster representative genome MGYG000308428 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308428 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309068 Copy API Endpoint
Samples containing this genome

MGYG000309068’s cluster representative (MGYG000308428) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308428’s sequence. Because MGYG000309068 has been clustered with MGYG000308428 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309068.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308428

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Containment Sample accession Animal accession Treatment
0.89 SAMEA9449951 Prebiotic
0.89 SAMEA7697586 Prebiotic
0.89 SAMEA10104991 Prebiotic
0.89 SAMEA10104981 Probiotic
0.89 SAMEA10105017 Probiotic
0.88 SAMEA7571800 Probiotic
0.88 SAMEA9449958 Probiotic
0.88 SAMEA9449947 Prebiotic
0.88 SAMEA7571845 Control
0.88 SAMEA9449889 Probiotic