HoloFood Data Portal

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MGYG000309034

Details for MGYG000309034, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
UMGS1795 sp900553555 Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-552 > UMGS1795 > UMGS1795 sp900553555
Cluster representative

MGYG000314332

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314332 on MGnify
 Show other genomes in cluster
Annotations

MGYG000309034’s cluster representative genome MGYG000314332 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314332 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000309034 Copy API Endpoint
Samples containing this genome

MGYG000309034’s cluster representative (MGYG000314332) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314332’s sequence. Because MGYG000309034 has been clustered with MGYG000314332 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000309034.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314332

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Containment Sample accession Animal accession Treatment
0.80 SAMEA7571768 Control
0.80 SAMEA7697591 Probiotic
0.80 SAMEA9449875 Prebiotic
0.79 SAMEA7025262 Control
0.78 SAMEA9449830 Control
0.78 SAMEA7571813 Prebiotic
0.78 SAMEA9449878 Control
0.78 SAMEA9449890 Probiotic
0.77 SAMEA10105009 Prebiotic
0.77 SAMEA9449836 Probiotic