HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308962

Details for MGYG000308962, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Alloclostridium intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > UBA3700 > Alloclostridium > Alloclostridium intestinigallinarum
Cluster representative

MGYG000315443

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315443 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308962’s cluster representative genome MGYG000315443 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315443 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308962 Copy API Endpoint
Samples containing this genome

MGYG000308962’s cluster representative (MGYG000315443) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315443’s sequence. Because MGYG000308962 has been clustered with MGYG000315443 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308962.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315443

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Containment Sample accession Animal accession Treatment
0.94 SAMEA10455473 Probiotic
0.94 SAMEA10455483 Prebiotic
0.94 SAMEA7571813 Prebiotic
0.93 SAMEA7697581 Probiotic
0.93 SAMEA10104915 Control
0.93 SAMEA10454446 Probiotic
0.93 SAMEA7697637 Prebiotic
0.93 SAMEA7571778 Control
0.92 SAMEA7571793 Prebiotic
0.92 SAMEA7025246 Probiotic