MGYG000308941

Taxonomy

Alistipes excrementigallinarum Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes excrementigallinarum

Cluster representative

MGYG000317766

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317766 on MGnify
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Annotations

MGYG000308941’s cluster representative genome MGYG000317766 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317766 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308941 Copy API Endpoint

MGYG000308941’s cluster representative (MGYG000317766) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317766’s sequence. Because MGYG000308941 has been clustered with MGYG000317766 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308941.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317766

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7025270	SAMEA112904830	Probiotic
1.00	SAMEA14099424	SAMEA112905085	Prebiotic
1.00	SAMEA14409936	SAMEA112904743	Control
1.00	SAMEA7697630	SAMEA112904928	Control
1.00	SAMEA10105024	SAMEA112905120	Control
1.00	SAMEA7025289	SAMEA112905253	Control
1.00	SAMEA7025286	SAMEA112904985	Prebiotic
1.00	SAMEA7025275	SAMEA112905332	Probiotic
1.00	SAMEA7571844	SAMEA112904814	Control
1.00	SAMEA7025280	SAMEA112905349	Probiotic