HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308890

Details for MGYG000308890, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Geddesella stercoravicola Bacteria > Firmicutes_A > Clostridia > Oscillospirales > UBA644 > Geddesella > Geddesella stercoravicola
Cluster representative

MGYG000318493

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318493 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308890’s cluster representative genome MGYG000318493 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318493 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308890 Copy API Endpoint
Samples containing this genome

MGYG000308890’s cluster representative (MGYG000318493) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318493’s sequence. Because MGYG000308890 has been clustered with MGYG000318493 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308890.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318493

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.60 SAMEA10145560 Control
0.59 SAMEA10454445 Probiotic
0.59 SAMEA9449879 Probiotic
0.59 SAMEA10104941 Probiotic
0.57 SAMEA7571800 Probiotic
0.57 SAMEA9449951 Prebiotic
0.56 SAMEA7697633 Prebiotic
0.56 SAMEA10104996 Prebiotic
0.56 SAMEA10104915 Control
0.56 SAMEA10455483 Prebiotic