HoloFood Data Portal

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MGYG000308839

Details for MGYG000308839, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Escherichia coli Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli
Cluster representative

MGYG000312616

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312616 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308839’s cluster representative genome MGYG000312616 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312616 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308839 Copy API Endpoint
Samples containing this genome

MGYG000308839’s cluster representative (MGYG000312616) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312616’s sequence. Because MGYG000308839 has been clustered with MGYG000312616 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308839.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312616

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Containment Sample accession Animal accession Treatment
0.27 SAMEA7571775 Control
0.27 SAMEA10130094 Prebiotic
0.27 SAMEA10130082 Probiotic
0.27 SAMEA7697601 Prebiotic
0.26 SAMEA10130127 Prebiotic
0.26 SAMEA10159254 Control
0.25 SAMEA10159261 Prebiotic
0.25 SAMEA7697609 Probiotic
0.25 SAMEA10104961 Probiotic
0.25 SAMEA10130039 Control