HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308821

Details for MGYG000308821, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Gallimonas intestinigallinarum Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas > Gallimonas intestinigallinarum
Cluster representative

MGYG000313943

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313943 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308821’s cluster representative genome MGYG000313943 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313943 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308821 Copy API Endpoint
Samples containing this genome

MGYG000308821’s cluster representative (MGYG000313943) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313943’s sequence. Because MGYG000308821 has been clustered with MGYG000313943 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308821.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313943

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7571838 Control
0.97 SAMEA9449952 Probiotic
0.96 SAMEA7025236 Probiotic
0.96 SAMEA10105010 Prebiotic
0.95 SAMEA9449907 Prebiotic
0.95 SAMEA7025262 Control
0.95 SAMEA10455479 Prebiotic
0.95 SAMEA7697576 Prebiotic
0.94 SAMEA9449950 Prebiotic
0.94 SAMEA10104993 Prebiotic