HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308780

Details for MGYG000308780, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Lachnoclostridium_A stercorigallinarum Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Lachnoclostridium_A > Lachnoclostridium_A stercorigallinarum
Cluster representative

MGYG000308780

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308780 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308780’s cluster representative genome MGYG000308780 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308780 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308780 Copy API Endpoint
Samples containing this genome

MGYG000308780’s cluster representative (MGYG000308780) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308780’s sequence. Because MGYG000308780 has been clustered with MGYG000308780 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308780.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308780

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Containment Sample accession Animal accession Treatment
0.32 SAMEA10104943 Probiotic
0.32 SAMEA10104944 Probiotic
0.31 SAMEA9449836 Probiotic
0.31 SAMEA10145589 Control
0.30 SAMEA7697606 Control
0.29 SAMEA7571819 Probiotic
0.29 SAMEA10104967 Prebiotic
0.29 SAMEA7571781 Control
0.29 SAMEA9449856 Prebiotic
0.29 SAMEA7025274 Probiotic