HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308735

Details for MGYG000308735, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Blautia_A Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Blautia_A
Cluster representative

MGYG000308735

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308735 on MGnify
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Annotations

MGYG000308735’s cluster representative genome MGYG000308735 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308735 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308735 Copy API Endpoint
Samples containing this genome

MGYG000308735’s cluster representative (MGYG000308735) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308735’s sequence. Because MGYG000308735 has been clustered with MGYG000308735 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308735.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308735

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Containment Sample accession Animal accession Treatment
0.22 SAMEA9449835 Probiotic
0.22 SAMEA7025264 Probiotic
0.22 SAMEA7025289 Control
0.22 SAMEA10104944 Probiotic
0.22 SAMEA7025255 Prebiotic
0.22 SAMEA7025282 Control
0.21 SAMEA7571835 Prebiotic
0.21 SAMEA7025283 Control
0.21 SAMEA7697598 Control
0.21 SAMEA7025246 Probiotic