HoloFood Data Portal

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MGYG000308717

Details for MGYG000308717, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Borkfalkia faecavium Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia faecavium
Cluster representative

MGYG000317500

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317500 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308717’s cluster representative genome MGYG000317500 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317500 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308717 Copy API Endpoint
Samples containing this genome

MGYG000308717’s cluster representative (MGYG000317500) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317500’s sequence. Because MGYG000308717 has been clustered with MGYG000317500 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308717.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317500

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Containment Sample accession Animal accession Treatment
0.36 SAMEA9449879 Probiotic
0.36 SAMEA14095991 Control
0.36 SAMEA10159245 Prebiotic
0.35 SAMEA10130088 Prebiotic
0.35 SAMEA9449836 Probiotic
0.35 SAMEA9449885 Control
0.35 SAMEA7697583 Probiotic
0.35 SAMEA10104918 Probiotic
0.34 SAMEA7571797 Control
0.34 SAMEA10104993 Prebiotic