HoloFood Data Portal

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MGYG000308686

Details for MGYG000308686, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Protoclostridium sp019113265 Bacteria > Firmicutes_A > Clostridia > Christensenellales > CAG-552 > Protoclostridium > Protoclostridium sp019113265
Cluster representative

MGYG000308686

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308686 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308686’s cluster representative genome MGYG000308686 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308686 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308686 Copy API Endpoint
Samples containing this genome

MGYG000308686’s cluster representative (MGYG000308686) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308686’s sequence. Because MGYG000308686 has been clustered with MGYG000308686 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308686.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308686

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Containment Sample accession Animal accession Treatment
0.31 SAMEA10455501 Probiotic
0.31 SAMEA7697578 Control
0.31 SAMEA9449852 Prebiotic
0.30 SAMEA10104933 Control
0.30 SAMEA9449885 Control
0.28 SAMEA9449892 Probiotic
0.28 SAMEA10104957 Control
0.27 SAMEA10105068 Prebiotic
0.27 SAMEA7368182 Prebiotic
0.26 SAMEA10104981 Probiotic