MGYG000308637

Taxonomy

Scatousia Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > Gastranaerophilaceae > Scatousia

Cluster representative

MGYG000315809

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315809 on MGnify
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Annotations

MGYG000308637’s cluster representative genome MGYG000315809 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315809 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308637 Copy API Endpoint

MGYG000308637’s cluster representative (MGYG000315809) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315809’s sequence. Because MGYG000308637 has been clustered with MGYG000315809 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308637.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315809

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571827	SAMEA112905382	Probiotic
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA7571832	SAMEA112905299	Control
1.00	SAMEA7571863	SAMEA112905012	Probiotic
1.00	SAMEA7025281	SAMEA112904979	Probiotic
1.00	SAMEA7697612	SAMEA112904835	Control
0.99	SAMEA9449952	SAMEA112905334	Probiotic
0.99	SAMEA7025273	SAMEA112904965	Prebiotic
0.99	SAMEA14099424	SAMEA112905085	Prebiotic
0.99	SAMEA7697607	SAMEA112904861	Control