HoloFood Data Portal

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MGYG000308637

Details for MGYG000308637, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatousia Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > Gastranaerophilaceae > Scatousia
Cluster representative

MGYG000315809

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315809 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308637’s cluster representative genome MGYG000315809 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315809 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308637 Copy API Endpoint
Samples containing this genome

MGYG000308637’s cluster representative (MGYG000315809) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315809’s sequence. Because MGYG000308637 has been clustered with MGYG000315809 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308637.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315809

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Containment Sample accession Animal accession Treatment
0.99 SAMEA7571829 Prebiotic
0.99 SAMEA7025274 Probiotic
0.99 SAMEA10105019 Control
0.99 SAMEA7571839 Control
0.99 SAMEA10105024 Control
0.99 SAMEA7025241 Probiotic
0.99 SAMEA7025282 Control
0.98 SAMEA10105021 Probiotic
0.97 SAMEA7571868 Prebiotic
0.96 SAMEA7571831 Control