HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308605

Details for MGYG000308605, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Scatosoma pullistercoris Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Scatosoma > Scatosoma pullistercoris
Cluster representative

MGYG000314953

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314953 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308605’s cluster representative genome MGYG000314953 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314953 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308605 Copy API Endpoint
Samples containing this genome

MGYG000308605’s cluster representative (MGYG000314953) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314953’s sequence. Because MGYG000308605 has been clustered with MGYG000314953 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308605.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314953

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Containment Sample accession Animal accession Treatment
0.89 SAMEA10104993 Prebiotic
0.89 SAMEA9449907 Prebiotic
0.88 SAMEA7722476 Control
0.87 SAMEA9449878 Control
0.87 SAMEA7025287 Prebiotic
0.86 SAMEA14099422 Control
0.84 SAMEA9449895 Probiotic
0.84 SAMEA10104968 Prebiotic
0.84 SAMEA9449860 Control
0.84 SAMEA7697601 Prebiotic