HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308593

Details for MGYG000308593, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Mediterraneibacter intestinavium Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Mediterraneibacter > Mediterraneibacter intestinavium
Cluster representative

MGYG000316912

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316912 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308593’s cluster representative genome MGYG000316912 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316912 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308593 Copy API Endpoint
Samples containing this genome

MGYG000308593’s cluster representative (MGYG000316912) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316912’s sequence. Because MGYG000308593 has been clustered with MGYG000316912 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308593.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316912

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Containment Sample accession Animal accession Treatment
0.21 SAMEA10104969 Probiotic
0.21 SAMEA10105009 Prebiotic
0.21 SAMEA7571861 Control
0.21 SAMEA10104915 Control
0.21 SAMEA7571868 Prebiotic
0.21 SAMEA9449918 Probiotic
0.20 SAMEA9449894 Probiotic
0.20 SAMEA10104941 Probiotic
0.20 SAMEA10105039 Probiotic
0.20 SAMEA7025288 Control