HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308584

Details for MGYG000308584, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Ligilactobacillus agilis Bacteria > Firmicutes > Bacilli > Lactobacillales > Lactobacillaceae > Ligilactobacillus > Ligilactobacillus agilis
Cluster representative

MGYG000308269

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308269 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308584’s cluster representative genome MGYG000308269 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308269 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308584 Copy API Endpoint
Samples containing this genome

MGYG000308584’s cluster representative (MGYG000308269) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308269’s sequence. Because MGYG000308584 has been clustered with MGYG000308269 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308584.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308269

 Download all as TSV
Containment Sample accession Animal accession Treatment
0.65 SAMEA7697588 Probiotic
0.62 SAMEA7368177 Probiotic
0.60 SAMEA7025237 Probiotic
0.59 SAMEA10130102 Probiotic
0.58 SAMEA7722474 Prebiotic
0.58 SAMEA10104987 Control
0.57 SAMEA10104967 Prebiotic
0.57 SAMEA9449925 Prebiotic
0.56 SAMEA10158027 Probiotic
0.53 SAMEA10104981 Probiotic