HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308533

Details for MGYG000308533, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdisoma faecalis Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Merdisoma > Merdisoma faecalis
Cluster representative

MGYG000313060

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313060 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308533’s cluster representative genome MGYG000313060 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313060 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308533 Copy API Endpoint
Samples containing this genome

MGYG000308533’s cluster representative (MGYG000313060) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313060’s sequence. Because MGYG000308533 has been clustered with MGYG000313060 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308533.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313060

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Containment Sample accession Animal accession Treatment
0.97 SAMEA10104910 Probiotic
0.97 SAMEA10454437 Probiotic
0.97 SAMEA7025282 Control
0.96 SAMEA7722478 Control
0.96 SAMEA7025267 Control
0.96 SAMEA10105046 Control
0.96 SAMEA7571814 Prebiotic
0.96 SAMEA7571844 Control
0.96 SAMEA7571822 Probiotic
0.95 SAMEA7697597 Probiotic