MGYG000308529

Taxonomy

Coprosoma sp000432855 Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Coprosoma > Coprosoma sp000432855

Cluster representative

MGYG000313459

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313459 on MGnify
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Annotations

MGYG000308529’s cluster representative genome MGYG000313459 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313459 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308529 Copy API Endpoint

MGYG000308529’s cluster representative (MGYG000313459) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313459’s sequence. Because MGYG000308529 has been clustered with MGYG000313459 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308529.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313459

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571843	SAMEA112904832	Prebiotic
1.00	SAMEA7571845	SAMEA112904735	Control
1.00	SAMEA7571832	SAMEA112905299	Control
1.00	SAMEA14409936	SAMEA112904743	Control
1.00	SAMEA9449955	SAMEA112905266	Probiotic
1.00	SAMEA9449941	SAMEA112905247	Prebiotic
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA7697624	SAMEA112905336	Probiotic
1.00	SAMEA9449954	SAMEA112905379	Probiotic
1.00	SAMEA7025277	SAMEA112905229	Control