HoloFood Data Portal

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MGYG000308528

Details for MGYG000308528, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Proteus mirabilis Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Proteus > Proteus mirabilis
Cluster representative

MGYG000312495

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000312495 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308528’s cluster representative genome MGYG000312495 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000312495 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308528 Copy API Endpoint
Samples containing this genome

MGYG000308528’s cluster representative (MGYG000312495) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000312495’s sequence. Because MGYG000308528 has been clustered with MGYG000312495 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308528.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000312495

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Containment Sample accession Animal accession Treatment
0.77 SAMEA7025243 Prebiotic
0.77 SAMEA7025284 Control
0.76 SAMEA10105028 Probiotic
0.76 SAMEA10105038 Probiotic
0.76 SAMEA7697634 Control
0.75 SAMEA10105043 Control
0.74 SAMEA10454438 Probiotic
0.72 SAMEA7571862 Probiotic
0.71 SAMEA9449917 Probiotic
0.70 SAMEA9449914 Probiotic