MGYG000308521

Taxonomy

Adamsella Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > CAJFVJ01 > Adamsella

Cluster representative

MGYG000315426

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315426 on MGnify
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Annotations

MGYG000308521’s cluster representative genome MGYG000315426 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315426 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308521 Copy API Endpoint

MGYG000308521’s cluster representative (MGYG000315426) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315426’s sequence. Because MGYG000308521 has been clustered with MGYG000315426 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308521.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315426

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10104911	SAMEA112904777	Probiotic
1.00	SAMEA7025274	SAMEA112905263	Probiotic
1.00	SAMEA9449937	SAMEA112904952	Probiotic
1.00	SAMEA10104915	SAMEA112904820	Control
1.00	SAMEA9449841	SAMEA112904936	Probiotic
1.00	SAMEA9449874	SAMEA112905232	Prebiotic
1.00	SAMEA9449862	SAMEA112905277	Prebiotic
1.00	SAMEA7571787	SAMEA112904931	Probiotic
1.00	SAMEA10104928	SAMEA112905211	Prebiotic
1.00	SAMEA10145556	SAMEA112904772	Control