MGYG000308521

Taxonomy

Adamsella Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > CAJFVJ01 > Adamsella

Cluster representative

MGYG000315426

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000315426 on MGnify
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Annotations

MGYG000308521’s cluster representative genome MGYG000315426 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000315426 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308521 Copy API Endpoint

MGYG000308521’s cluster representative (MGYG000315426) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000315426’s sequence. Because MGYG000308521 has been clustered with MGYG000315426 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308521.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000315426

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697584	SAMEA112904877	Control
1.00	SAMEA10104993	SAMEA112905352	Prebiotic
1.00	SAMEA10145562	SAMEA112905169	Control
1.00	SAMEA9449892	SAMEA112905181	Probiotic
1.00	SAMEA10455477	SAMEA112905240	Probiotic
1.00	SAMEA10145595	SAMEA112904895	Control
1.00	SAMEA10104925	SAMEA112905338	Control
1.00	SAMEA7571850	SAMEA112904906	Prebiotic
1.00	SAMEA7697592	SAMEA112904737	Control
1.00	SAMEA7571841	SAMEA112904773	Probiotic