MGYG000308517

Taxonomy

Borkfalkia avicola Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia avicola

Cluster representative

MGYG000316034

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316034 on MGnify
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Annotations

MGYG000308517’s cluster representative genome MGYG000316034 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316034 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308517 Copy API Endpoint

MGYG000308517’s cluster representative (MGYG000316034) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316034’s sequence. Because MGYG000308517 has been clustered with MGYG000316034 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308517.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316034

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7571843	SAMEA112904832	Prebiotic
0.99	SAMEA10130088	SAMEA112904832	Prebiotic
0.99	SAMEA7025287	SAMEA112905268	Prebiotic
0.99	SAMEA9449963	SAMEA112905164	Probiotic
0.98	SAMEA7025277	SAMEA112905229	Control
0.97	SAMEA10104993	SAMEA112905352	Prebiotic
0.97	SAMEA10145595	SAMEA112904895	Control
0.97	SAMEA9449940	SAMEA112905148	Prebiotic
0.96	SAMEA7697592	SAMEA112904737	Control
0.96	SAMEA9449916	SAMEA112905127	Probiotic