MGYG000308517

Taxonomy

Borkfalkia avicola Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Borkfalkia > Borkfalkia avicola

Cluster representative

MGYG000316034

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316034 on MGnify
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Annotations

MGYG000308517’s cluster representative genome MGYG000316034 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316034 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308517 Copy API Endpoint

MGYG000308517’s cluster representative (MGYG000316034) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316034’s sequence. Because MGYG000308517 has been clustered with MGYG000316034 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308517.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316034

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Containment	Sample accession	Animal accession	Treatment
0.21	SAMEA10105046	SAMEA112904997	Control
0.20	SAMEA10159257	SAMEA112905376	Control
0.20	SAMEA10105021	SAMEA112905307	Probiotic
0.20	SAMEA10455493	SAMEA112905037	Probiotic
0.20	SAMEA7571822	SAMEA112904992	Probiotic
0.20	SAMEA10455487	SAMEA112904975	Control
0.20	SAMEA10159246	SAMEA112904950	Prebiotic