HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308476

Details for MGYG000308476, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Erysipelatoclostridium merdavium Bacteria > Firmicutes > Bacilli > Erysipelotrichales > Coprobacillaceae > Erysipelatoclostridium > Erysipelatoclostridium merdavium
Cluster representative

MGYG000320236

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000320236 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308476’s cluster representative genome MGYG000320236 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000320236 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308476 Copy API Endpoint
Samples containing this genome

MGYG000308476’s cluster representative (MGYG000320236) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000320236’s sequence. Because MGYG000308476 has been clustered with MGYG000320236 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308476.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000320236

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Containment Sample accession Animal accession Treatment
0.95 SAMEA10104935 Prebiotic
0.95 SAMEA7571801 Probiotic
0.95 SAMEA9449921 Control
0.94 SAMEA7025247 Probiotic
0.93 SAMEA7697595 Prebiotic
0.92 SAMEA9449889 Probiotic
0.92 SAMEA7697581 Probiotic
0.91 SAMEA7025239 Probiotic
0.91 SAMEA7571790 Prebiotic
0.90 SAMEA7025288 Control