HoloFood Data Portal

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MGYG000308474

Details for MGYG000308474, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Nanosyncoccus Bacteria > Patescibacteria > Saccharimonadia > Saccharimonadales > Nanosyncoccaceae > Nanosyncoccus
Cluster representative

MGYG000319639

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319639 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308474’s cluster representative genome MGYG000319639 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319639 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308474 Copy API Endpoint
Samples containing this genome

MGYG000308474’s cluster representative (MGYG000319639) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319639’s sequence. Because MGYG000308474 has been clustered with MGYG000319639 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308474.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319639

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Containment Sample accession Animal accession Treatment
0.74 SAMEA10105061 Control
0.71 SAMEA7368187 Control
0.71 SAMEA7697626 Probiotic
0.68 SAMEA9449949 Prebiotic
0.67 SAMEA9449916 Probiotic
0.67 SAMEA10130076 Prebiotic
0.66 SAMEA7025281 Probiotic
0.64 SAMEA9449933 Prebiotic
0.64 SAMEA10105025 Prebiotic
0.62 SAMEA9449947 Prebiotic