MGYG000308417

Taxonomy

Alistipes merdavium Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > Rikenellaceae > Alistipes > Alistipes merdavium

Cluster representative

MGYG000316309

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316309 on MGnify
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Annotations

MGYG000308417’s cluster representative genome MGYG000316309 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316309 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308417 Copy API Endpoint

MGYG000308417’s cluster representative (MGYG000316309) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316309’s sequence. Because MGYG000308417 has been clustered with MGYG000316309 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308417.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316309

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA7697597	SAMEA112905231	Probiotic
1.00	SAMEA9449909	SAMEA112904947	Prebiotic
1.00	SAMEA10104961	SAMEA112904891	Probiotic
1.00	SAMEA7571814	SAMEA112904917	Prebiotic
1.00	SAMEA10145583	SAMEA112904929	Control
1.00	SAMEA10104992	SAMEA112905146	Prebiotic
1.00	SAMEA14095991	SAMEA112904755	Control
1.00	SAMEA7571797	SAMEA112904908	Control
1.00	SAMEA10104968	SAMEA112905092	Prebiotic
1.00	SAMEA10104964	SAMEA112905009	Control