HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000308401

Details for MGYG000308401, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
JAHALF01 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > CAG-274 > JAHALF01
Cluster representative

MGYG000316881

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000316881 on MGnify
 Show other genomes in cluster
Annotations

MGYG000308401’s cluster representative genome MGYG000316881 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000316881 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308401 Copy API Endpoint
Samples containing this genome

MGYG000308401’s cluster representative (MGYG000316881) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000316881’s sequence. Because MGYG000308401 has been clustered with MGYG000316881 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308401.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000316881

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Containment Sample accession Animal accession Treatment
1.00 SAMEA10455500 Control
1.00 SAMEA10105014 Probiotic
1.00 SAMEA10159260 Control
1.00 SAMEA7025263 Control
1.00 SAMEA7025266 Probiotic
1.00 SAMEA9449922 Control
0.95 SAMEA10455491 Probiotic
0.90 SAMEA7571793 Prebiotic
0.88 SAMEA7571822 Probiotic
0.76 SAMEA10159258 Probiotic