MGYG000308396

Taxonomy

Gallimonas Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Gallimonas

Cluster representative

MGYG000318993

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000318993 on MGnify
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Annotations

MGYG000308396’s cluster representative genome MGYG000318993 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000318993 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308396 Copy API Endpoint

MGYG000308396’s cluster representative (MGYG000318993) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000318993’s sequence. Because MGYG000308396 has been clustered with MGYG000318993 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308396.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000318993

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10105037	SAMEA112904745	Probiotic
1.00	SAMEA7025266	SAMEA112905005	Probiotic
1.00	SAMEA7025280	SAMEA112905349	Probiotic
1.00	SAMEA7571841	SAMEA112904773	Probiotic
1.00	SAMEA7571800	SAMEA112904785	Probiotic
1.00	SAMEA7025271	SAMEA112905138	Probiotic
1.00	SAMEA14099424	SAMEA112905085	Prebiotic
1.00	SAMEA7722474	SAMEA112904967	Prebiotic
1.00	SAMEA7571829	SAMEA112905154	Prebiotic
1.00	SAMEA7697625	SAMEA112904897	Probiotic