MGYG000308383

Taxonomy

Stercorousia sp000437435 Bacteria > Cyanobacteria > Vampirovibrionia > Gastranaerophilales > Gastranaerophilaceae > Stercorousia > Stercorousia sp000437435

Cluster representative

MGYG000319700

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319700 on MGnify
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Annotations

MGYG000308383’s cluster representative genome MGYG000319700 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319700 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000308383 Copy API Endpoint

MGYG000308383’s cluster representative (MGYG000319700) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319700’s sequence. Because MGYG000308383 has been clustered with MGYG000319700 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000308383.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319700

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10145595	SAMEA112904895	Control
1.00	SAMEA7697633	SAMEA112904818	Prebiotic
1.00	SAMEA10105060	SAMEA112905170	Control
1.00	SAMEA7025287	SAMEA112905268	Prebiotic
1.00	SAMEA7025288	SAMEA112905217	Control
1.00	SAMEA9449916	SAMEA112905127	Probiotic
1.00	SAMEA7697613	SAMEA112905262	Prebiotic
1.00	SAMEA10105056	SAMEA112904738	Prebiotic
1.00	SAMEA10454449	SAMEA112905153	Prebiotic
1.00	SAMEA10105025	SAMEA112904944	Prebiotic