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SAMEA9069014: SB12.04C1a

Sample data for SAMEA9069014, a HoloFood host-genomic salmon sample

Sample details
Salmon SAMEA112949155
Sample type
Host genome data icon host-genomic
API endpoint
/api/samples/SAMEA9069014 Copy API Endpoint
Sample metadata

Metadata for sample SAMEA9069014, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
ENA-FIRST-PUBLIC 2023-03-22 None
ENA-LAST-UPDATE 2023-03-22 None
External Id SAMEA9069014 None
INSDC first public 2023-03-22T12:21:42Z None
INSDC last update 2023-03-22T12:21:42Z None
INSDC status public None
SRA accession ERS6797329 None
Submitter Id SB12_04C1a_hostG None
collection date 2019-08-14 None
common name Atlantic salmon None
description Salmon host genomic data from Distal gut content; animal SB12.04 from tank SB12 with treatment Venus None
geographic location (country and/or sea) Norway None
geographic location (latitude) 66.08 DD
geographic location (longitude) 12.588 DD
geographic location (region and locality) Dønna; Nordland county None
host body site Distal gut content None
host common name Atlantic salmon None
host diet Sanford Blue Mussel Meal None
host diet treatment Venus: SB 8.7% blue mussel meal None
host diet treatment concentration 0 % mass
host disease status Wounded:- None
host gutted mass 173 g
host length 27.5 cm
host scientific name Salmo salar None
host storage container LetSea Tank: Venus None
host storage container pH 7.05 None
host storage container temperature 12.76 °C
host subject id SB12.04 None
host taxid 8030 None
host total mass 201.2 g
library name BEST None
library selection PCR None
nucleic acid extraction D-rex protocol None
organism Salmo salar None
project HoloFood None
project name HoloFood Salmon - Host Genome None
reference host genome for decontamination GCA_000000000.0 None
sample storage buffer Shield None
sample storage container 2ml E-matrix None
sample storage location UCPH None
sample storage temperature -20 °C
sample volume or weight for DNA extraction 0.2 mL
scientific_name Salmo salar None
sequencing method MGISEQ-2000 None
title SB12.04C1a None
trial timepoint 0 day

Sample metadata

Marker Measurement Units
Body site distal gut content None
Experiment genomics None
Index PCR cycles 12 None
Lab Process ID LPS00497 None
Omics Metagenomics None
Organism Salmon None
Pool S-MG-P47-532 None
Project HoloFood None
Raw seq. name S-MG-P47-532/V300074300_L03_532 None
Sample code SB12.04C1a None
Sequencing company BGI None

Treatment metadata

Marker Measurement Units
Treatment code Venus None
Treatment concentration 8.7% %
Treatment description Sanford Blue Mussel Meal None

Trial metadata

Marker Measurement Units
Environment Tanks (flow-through) None
Trial code SB None
Trial description Trial B: Blue mussel-dose response None
Trial end 2019-11-22 None
Trial start 2019-08-14 None
Nucleotide sequencing data

Sample SAMEA9069014 has nucleotide sequencing data in the European Nucleotide Archive (ENA): 12,879,848,165bp sequenced by 88,991,800 reads. View sample SAMEA9069014 in ENA

Related records in ENA

Data domain Accession Title/alias
Sample SAMEA9069014 SB12.04C1a
Reads (Run) ERR5985594 webin-reads-SB12_04C1a_hostG
Reads (Experiment) ERX5625272 DNBSEQ-G400 sequencing: Raw reads: SB12_04C1a_hostG
Project/Study PRJEB45274 HoloFood Salmon Host Genome

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA9069014