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SAMEA112905605: CC07.07A3a_Histology

Sample data for SAMEA112905605, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112905115
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905605 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905605, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 3.9 per 100um
Acidic goblet cell number 23.54 None
CD3VillusBase 33.76 per 1000um squared
CD3VillusBaseEP 33.59 per 1000um squared
CD3VillusBaseLP 34.13 per 1000um squared
CD3VillusTip 22.23 per 1000um squared
CD3VillusTipEP 16.06 per 1000um squared
CD3VillusTipLP 37.97 per 1000um squared
CD3crypt 14.31 per 1000um squared
CD3cryptEP 19.03 per 1000um squared
CD3cryptLP 9.59 per 1000um squared
Crypt depth 153.38 um
Epithelial area 94.9 per 1000um squared
Mixed goblet cell density 18.4 per 100um
Mixed goblet cell number 111.04 None
Total goblet cell density 22.3 per 100um
Total goblet cell number 134.58 None
Villus height 603.5 um
Villus height: crypt depth ratio 3.93 um/um
Villus width 157.25 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CC07.07A3a None

Treatment metadata

Marker Measurement Units
Treatment code CE None
Treatment name Prebiotic None

Trial metadata

Marker Measurement Units
Trial code CC None
Trial description Trial 3 None
Trial end 2019-07-14 None
Trial start 2019-06-09 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905605