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SAMEA112905493: CA20.13A3a_Histology

Sample data for SAMEA112905493, a HoloFood histological chicken sample


Sample details
Animal
Chicken SAMEA112904905
Sample type
Histology data icon histological
API endpoint
/api/samples/SAMEA112905493 Copy API Endpoint
Sample data

Metadata for sample SAMEA112905493, stored in BioSamples and ENA.

 Download all as TSV

Ena Checklist metadata

Marker Measurement Units
Organism Gallus gallus None
project HoloFood None

Histology metadata

Marker Measurement Units
Acidic goblet cell density 0.2 per 100um
Acidic goblet cell number 0.49 None
CD3VillusBase 28.6 per 1000um squared
CD3VillusBaseEP 26.35 per 1000um squared
CD3VillusBaseLP 31.93 per 1000um squared
CD3VillusTip 32.12 per 1000um squared
CD3VillusTipEP 29.29 per 1000um squared
CD3VillusTipLP 39.74 per 1000um squared
CD3crypt 35.77 per 1000um squared
CD3cryptEP 46.39 per 1000um squared
CD3cryptLP 25.16 per 1000um squared
Crypt depth 71.63 um
Epithelial area 24.51 per 1000um squared
Mixed goblet cell density 34.4 per 100um
Mixed goblet cell number 83.68 None
Total goblet cell density 34.6 per 100um
Total goblet cell number 84.16 None
Villus height 243.3 um
Villus height: crypt depth ratio 3.4 um/um
Villus width 100.75 um

Sample metadata

Marker Measurement Units
Body site ileum tissue None
Experiment histology None
Organism Chicken None
Project HoloFood None
Sample code CA20.13A3a None

Treatment metadata

Marker Measurement Units
Treatment code CO None
Treatment name Probiotic None

Trial metadata

Marker Measurement Units
Trial code CA None
Trial description Trial 1 None
Trial end 2019-03-11 None
Trial start 2019-02-04 None

Analysis summaries

Documents written by HoloFood partners and collaborators relevant to Sample SAMEA112905493