HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000307510

Details for MGYG000307510, a genome assembled from HoloFood salmon metagenomes


Genome details
Taxonomy
Photobacterium phosphoreum Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacterales > Vibrionaceae > Photobacterium > Photobacterium phosphoreum
Cluster representative

MGYG000299534

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000299534 on MGnify
 Show other genomes in cluster
Annotations

MGYG000307510’s cluster representative genome MGYG000299534 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000299534 from each CAZy category.

API endpoint
/api/genome-catalogues/salmon-gut-v2-0/genomes/MGYG000307510 Copy API Endpoint
Samples containing this genome

MGYG000307510’s cluster representative (MGYG000299534) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000299534’s sequence. Because MGYG000307510 has been clustered with MGYG000299534 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000307510.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000299534

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Containment Sample accession Animal accession Treatment
0.93 SAMEA7687901 Fermented algae meal (added in in oil coating)
0.82 SAMEA7688023 Fermented algae meal (added in in oil coating)
0.82 SAMEA7688132 Sanford Blue Mussel Meal
0.82 SAMEA7688070 Sanford Blue Mussel Meal
0.82 SAMEA7688022 Fermented algae meal (added in in oil coating)
0.81 SAMEA7688231 Sanford Blue Mussel Meal
0.81 SAMEA7688196 Sanford Blue Mussel Meal
0.81 SAMEA7688142 Sanford Blue Mussel Meal
0.81 SAMEA7687886 Fermented algae meal (added in in oil coating)
0.81 SAMEA7687898 Fermented algae meal (added in in oil coating)