HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000307507

Details for MGYG000307507, a genome assembled from HoloFood salmon metagenomes


Genome details
Taxonomy
Mycoplasmoidaceae Bacteria > Firmicutes > Bacilli > Mycoplasmatales > Mycoplasmoidaceae
Cluster representative

MGYG000299579

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000299579 on MGnify
 Show other genomes in cluster
Annotations

MGYG000307507’s cluster representative genome MGYG000299579 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000299579 from each CAZy category.

API endpoint
/api/genome-catalogues/salmon-gut-v2-0/genomes/MGYG000307507 Copy API Endpoint
Samples containing this genome

MGYG000307507’s cluster representative (MGYG000299579) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000299579’s sequence. Because MGYG000307507 has been clustered with MGYG000299579 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000307507.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000299579

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Containment Sample accession Animal accession Treatment
0.43 SAMEA7688084 Sanford Blue Mussel Meal
0.43 SAMEA7688023 Fermented algae meal (added in in oil coating)
0.40 SAMEA7688109 Sanford Blue Mussel Meal
0.40 SAMEA7688152 Sanford Blue Mussel Meal
0.40 SAMEA7687887 Fermented algae meal (added in in oil coating)
0.39 SAMEA7688062 Sanford Blue Mussel Meal
0.39 SAMEA7688211 Sanford Blue Mussel Meal
0.39 SAMEA7688155 Sanford Blue Mussel Meal
0.37 SAMEA7687978 Fermented algae meal (added in in oil coating)
0.34 SAMEA7688186 Sanford Blue Mussel Meal