HoloFood Data Portal

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MGYG000320878

Details for MGYG000320878, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coprenecus pullicola Bacteria > Bacteroidota > Bacteroidia > Bacteroidales > UBA932 > Coprenecus > Coprenecus pullicola
Cluster representative

MGYG000319284

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319284 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320878’s cluster representative genome MGYG000319284 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319284 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320878 Copy API Endpoint
Samples containing this genome

MGYG000320878’s cluster representative (MGYG000319284) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319284’s sequence. Because MGYG000320878 has been clustered with MGYG000319284 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320878.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319284

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Containment Sample accession Animal accession Treatment
0.43 SAMEA7025241 Probiotic
0.43 SAMEA9449950 Prebiotic
0.41 SAMEA7571809 Control
0.40 SAMEA9449918 Probiotic
0.32 SAMEA7571816 Prebiotic
0.29 SAMEA7368186 Probiotic
0.29 SAMEA7697608 Control
0.28 SAMEA9449916 Probiotic
0.28 SAMEA7697583 Probiotic
0.27 SAMEA7025236 Probiotic