HoloFood Data Portal

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MGYG000320875

Details for MGYG000320875, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Faecalibacterium gallistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Ruminococcaceae > Faecalibacterium > Faecalibacterium gallistercoris
Cluster representative

MGYG000308025

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308025 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320875’s cluster representative genome MGYG000308025 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308025 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320875 Copy API Endpoint
Samples containing this genome

MGYG000320875’s cluster representative (MGYG000308025) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308025’s sequence. Because MGYG000320875 has been clustered with MGYG000308025 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320875.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308025

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Containment Sample accession Animal accession Treatment
0.91 SAMEA10145572 Control
0.91 SAMEA7025285 Control
0.91 SAMEA7571768 Control
0.91 SAMEA10104915 Control
0.90 SAMEA10145585 Control
0.90 SAMEA7025254 Prebiotic
0.90 SAMEA9449907 Prebiotic
0.90 SAMEA7571820 Probiotic
0.90 SAMEA7697592 Control
0.90 SAMEA10455477 Probiotic