HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320863

Details for MGYG000320863, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Frisingicoccus sp900753685 Bacteria > Firmicutes_A > Clostridia > Lachnospirales > Lachnospiraceae > Frisingicoccus > Frisingicoccus sp900753685
Cluster representative

MGYG000313757

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000313757 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320863’s cluster representative genome MGYG000313757 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000313757 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320863 Copy API Endpoint
Samples containing this genome

MGYG000320863’s cluster representative (MGYG000313757) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000313757’s sequence. Because MGYG000320863 has been clustered with MGYG000313757 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320863.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000313757

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Containment Sample accession Animal accession Treatment
0.34 SAMEA10145556 Control
0.34 SAMEA7697616 Probiotic
0.29 SAMEA10105025 Prebiotic
0.26 SAMEA9449877 Control
0.25 SAMEA10105067 Prebiotic
0.25 SAMEA7571817 Control
0.24 SAMEA9449858 Probiotic
0.24 SAMEA7368182 Prebiotic
0.23 SAMEA10104921 Prebiotic