HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320858

Details for MGYG000320858, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Onthousia faecigallinarum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Onthousia > Onthousia faecigallinarum
Cluster representative

MGYG000309493

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000309493 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320858’s cluster representative genome MGYG000309493 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000309493 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320858 Copy API Endpoint
Samples containing this genome

MGYG000320858’s cluster representative (MGYG000309493) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000309493’s sequence. Because MGYG000320858 has been clustered with MGYG000309493 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320858.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000309493

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Containment Sample accession Animal accession Treatment
1.00 SAMEA7025260 Prebiotic
0.99 SAMEA10145562 Control
0.98 SAMEA7025265 Probiotic
0.98 SAMEA10104962 Control
0.95 SAMEA7722473 Prebiotic
0.95 SAMEA7722476 Control
0.93 SAMEA7571801 Probiotic
0.93 SAMEA10104963 Control
0.92 SAMEA7697576 Prebiotic
0.92 SAMEA14099425 Prebiotic