HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320852

Details for MGYG000320852, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Coproplasma avicola Bacteria > Firmicutes_A > Clostridia > Christensenellales > Borkfalkiaceae > Coproplasma > Coproplasma avicola
Cluster representative

MGYG000314257

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000314257 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320852’s cluster representative genome MGYG000314257 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000314257 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320852 Copy API Endpoint
Samples containing this genome

MGYG000320852’s cluster representative (MGYG000314257) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000314257’s sequence. Because MGYG000320852 has been clustered with MGYG000314257 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320852.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000314257

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Containment Sample accession Animal accession Treatment
0.63 SAMEA10104996 Prebiotic
0.63 SAMEA10105051 Control
0.63 SAMEA10104945 Probiotic
0.63 SAMEA7571814 Prebiotic
0.63 SAMEA10105005 Probiotic
0.63 SAMEA7571804 Prebiotic
0.63 SAMEA10455501 Probiotic
0.63 SAMEA10104930 Control
0.63 SAMEA10105046 Control
0.63 SAMEA9449873 Prebiotic