HoloFood Data Portal

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MGYG000320842

Details for MGYG000320842, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Merdibacter merdipullorum Bacteria > Firmicutes > Bacilli > Erysipelotrichales > Erysipelotrichaceae > Merdibacter > Merdibacter merdipullorum
Cluster representative

MGYG000308834

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000308834 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320842’s cluster representative genome MGYG000308834 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000308834 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320842 Copy API Endpoint
Samples containing this genome

MGYG000320842’s cluster representative (MGYG000308834) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000308834’s sequence. Because MGYG000320842 has been clustered with MGYG000308834 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320842.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000308834

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Containment Sample accession Animal accession Treatment
0.29 SAMEA10104968 Prebiotic
0.28 SAMEA9449927 Prebiotic
0.28 SAMEA10105025 Prebiotic
0.28 SAMEA7025254 Prebiotic
0.28 SAMEA7697618 Prebiotic
0.27 SAMEA7697616 Probiotic
0.27 SAMEA10105051 Control
0.27 SAMEA10455493 Probiotic
0.26 SAMEA7571797 Control
0.26 SAMEA7697626 Probiotic