HoloFood Data Portal

Access samples and data collected and generated by the HoloFood project.

MGYG000320834

Details for MGYG000320834, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Pelethosoma merdigallinarum Bacteria > Firmicutes > Bacilli > RF39 > UBA660 > Pelethosoma > Pelethosoma merdigallinarum
Cluster representative

MGYG000317857

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317857 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320834’s cluster representative genome MGYG000317857 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317857 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320834 Copy API Endpoint
Samples containing this genome

MGYG000320834’s cluster representative (MGYG000317857) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317857’s sequence. Because MGYG000320834 has been clustered with MGYG000317857 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320834.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317857

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Containment Sample accession Animal accession Treatment
0.26 SAMEA10145601 Control
0.26 SAMEA7025287 Prebiotic
0.25 SAMEA10104911 Probiotic
0.25 SAMEA10104957 Control
0.25 SAMEA10105047 Control
0.24 SAMEA9449852 Prebiotic
0.23 SAMEA9449886 Control
0.23 SAMEA9449866 Probiotic
0.23 SAMEA7697575 Control
0.23 SAMEA10104945 Probiotic