HoloFood Data Portal

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MGYG000320828

Details for MGYG000320828, a genome assembled from HoloFood chicken metagenomes


Genome details
Taxonomy
Agathobaculum pullistercoris Bacteria > Firmicutes_A > Clostridia > Oscillospirales > Butyricicoccaceae > Agathobaculum > Agathobaculum pullistercoris
Cluster representative

MGYG000317381

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000317381 on MGnify
 Show other genomes in cluster
Annotations

MGYG000320828’s cluster representative genome MGYG000317381 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000317381 from each CAZy category.

API endpoint
/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320828 Copy API Endpoint
Samples containing this genome

MGYG000320828’s cluster representative (MGYG000317381) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000317381’s sequence. Because MGYG000320828 has been clustered with MGYG000317381 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320828.

Filter containing samples

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000317381

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Containment Sample accession Animal accession Treatment
0.23 SAMEA7571867 Control
0.23 SAMEA10145564 Control
0.23 SAMEA10145570 Control
0.23 SAMEA10455491 Probiotic
0.22 SAMEA9449944 Control
0.22 SAMEA7025270 Probiotic
0.22 SAMEA7571787 Probiotic
0.22 SAMEA10105061 Control
0.22 SAMEA9449915 Probiotic
0.22 SAMEA10159265 Probiotic