MGYG000320814

Taxonomy

Scatocola faecipullorum Bacteria > Proteobacteria > Alphaproteobacteria > RF32 > CAG-239 > Scatocola > Scatocola faecipullorum

Cluster representative

MGYG000319769

Genomes in MGnify Genome Catalogues are clustered by sequence similarity, at the species level. A cluster representative genome is chosen as the best quality genome for each cluster. This representative may or may not be from HoloFood data.

 View MGYG000319769 on MGnify
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Annotations

MGYG000320814’s cluster representative genome MGYG000319769 has been annotated by MGnify’s Genomes pipeline. CAZy (Carbohydrate-Active enZymes) annotations are particularly relevant to HoloFood’s experimental goals, and this graphic shows the number of CAZy annotations on MGYG000319769 from each CAZy category.

API endpoint

/api/genome-catalogues/chicken-gut-v2-0/genomes/MGYG000320814 Copy API Endpoint

MGYG000320814’s cluster representative (MGYG000319769) has been searched for in all HoloFood samples, using a sourmash-based tool. These samples contain some or all of the kmers in MGYG000319769’s sequence. Because MGYG000320814 has been clustered with MGYG000319769 at 95% sequence similarity, this indicates that these samples are likely to contain MGYG000320814.

Filter containing samples

Sample accession contains

Sample animal accession contains

Minimum containment

Fraction of MAG kmers present in samples

Samples containing cluster representative MGYG000319769

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Containment	Sample accession	Animal accession	Treatment
1.00	SAMEA10455484	SAMEA112904896	Prebiotic
1.00	SAMEA9449907	SAMEA112905341	Prebiotic
0.97	SAMEA7025241	SAMEA112905244	Probiotic
0.97	SAMEA7571872	SAMEA112905318	Prebiotic
0.96	SAMEA10105037	SAMEA112904745	Probiotic
0.95	SAMEA14099424	SAMEA112905085	Prebiotic
0.94	SAMEA7697617	SAMEA112905296	Prebiotic
0.94	SAMEA9449956	SAMEA112904759	Probiotic
0.94	SAMEA9449952	SAMEA112905334	Probiotic
0.94	SAMEA7025271	SAMEA112905138	Probiotic